Recipe: Fresh Pumpkin Cheesecake Cups

Probably the best recipe invention of all time has got to be cheesecake recipes, right?

Recipes like this are easy to make and don’t take much effort to pull off.

And that’s perfect for people who are super busy.

That’s why I love these fresh pumpkin cheesecake cups.

no-bake pumpkin cheesecake cup

Plus, they look like they take so much freaking effort right?

Granted, if you’ve got one of those silicone cupcake molds you can make them look a bit different (see photo further down the page).

But no matter what they look like, these things are both easy and delicious.

Here’s that recipe for ya –

fresh pumpkin cheesecake cup

Fresh Pumpkin Cheesecake Cups

Yield: 12 cups
Prep Time: 30 minutes
Cook Time: 25 minutes
Additional Time: 4 hours
Total Time: 4 hours 55 minutes

These individual pumpkin cheesecake cups combine velvety cream cheese with fresh pumpkin puree and warm fall spices, all nestled on a buttery graham cracker crust. They're the perfect make-ahead dessert for Thanksgiving, autumn gatherings, or anytime you crave a lighter, portion-controlled alternative to traditional cheesecake.

Ingredients

  • 1 small sugar pumpkin (about 2 pounds, to yield 1 cup puree)
  • 1 cup graham cracker crumbs (about 8 graham crackers)
  • 2 tablespoons granulated sugar (for crust)
  • 4 tablespoons unsalted butter (melted)
  • 16 ounces cream cheese (room temperature, 2 packages)
  • 2/3 cup granulated sugar (for filling)
  • 1 cup fresh pumpkin puree (from roasted pumpkin, cooled)
  • 2 large eggs (room temperature)
  • 1/4 cup sour cream (room temperature)
  • 1 teaspoon vanilla extract
  • 1 teaspoon ground cinnamon
  • 1/2 teaspoon ground ginger
  • 1/4 teaspoon ground allspice
  • 1/8 teaspoon ground cloves
  • 1/4 teaspoon salt
  • as needed whipped cream (for topping)

Instructions

1. Prepare the fresh pumpkin puree: Preheat your oven to 400°F (200°C). Cut the sugar pumpkin in half and scoop out the seeds and stringy pulp. Place the halves cut-side down on a parchment-lined baking sheet. Roast for 40-50 minutes until the flesh is very soft and easily pierced with a fork.

💡 Tip: The pumpkin skin will darken and the flesh should be tender. This step can be done a day ahead.

2. Let the roasted pumpkin cool for 10-15 minutes, then scoop out the flesh and transfer to a food processor or blender. Puree until completely smooth. Measure out 1 cup of puree and set aside. Store any extra puree in the refrigerator for up to 5 days or freeze for later use.

💡 Tip: If the puree seems watery, place it in a fine-mesh strainer lined with cheesecloth over a bowl and let it drain for 15-20 minutes to remove excess moisture.

3. Reduce oven temperature to 325°F (160°C). Line a 12-cup muffin tin with paper or silicone liners.

💡 Tip: Paper liners make for easier removal and serving.

4. Make the crust: In a medium bowl, combine graham cracker crumbs, 2 tablespoons sugar, and melted butter. Mix until the mixture resembles wet sand and holds together when pressed.

💡 Tip: Use a fork to ensure even distribution of butter throughout the crumbs.

5. Divide the crust mixture evenly among the 12 muffin cups, using about 1 tablespoon per cup. Press down firmly with the bottom of a small glass or measuring cup to create a compact layer.

💡 Tip: A tamper or the back of a spoon also works well for pressing. The firmer the crust, the better it will hold together.

6. Bake the crusts for 5 minutes, then remove from oven and let cool while you prepare the filling.

💡 Tip: This brief baking helps set the crust and prevents it from becoming soggy.

7. Make the cheesecake filling: In a large bowl, beat the cream cheese with an electric mixer on medium speed for 2-3 minutes until smooth and fluffy with no lumps.

💡 Tip: Make sure the cream cheese is truly at room temperature for the smoothest texture.

8. Add the 2/3 cup sugar to the cream cheese and beat for another 1-2 minutes until well combined and creamy.

💡 Tip: Scrape down the sides of the bowl periodically to ensure even mixing.

9. Add the pumpkin puree, cinnamon, ginger, allspice, cloves, and salt. Beat on medium-low speed until fully incorporated and smooth.

💡 Tip: Don't overmix once you add the pumpkin to maintain a silky texture.

10. Add the sour cream and vanilla extract, mixing just until combined.

💡 Tip: Sour cream adds tanginess and helps create a creamy, stable filling.

11. Add the eggs one at a time, beating on low speed after each addition just until incorporated. Avoid overbeating once eggs are added.

💡 Tip: Overbeating after adding eggs can incorporate too much air, leading to cracks during baking.

12. Divide the cheesecake filling evenly among the 12 muffin cups, filling each about 3/4 full over the pre-baked crusts.

💡 Tip: A small ladle or ice cream scoop works perfectly for portioning the filling evenly.

13. Bake at 325°F (160°C) for 20-25 minutes, until the edges are set but the centers still jiggle slightly when gently shaken.

💡 Tip: The cheesecakes will continue to set as they cool. Overbaking can cause cracking and a dry texture.

14. Remove from the oven and let cool in the pan on a wire rack for 30 minutes at room temperature.

💡 Tip: Gradual cooling helps prevent cracking from temperature shock.

15. Once cooled to room temperature, cover the muffin tin with plastic wrap and refrigerate for at least 4 hours or overnight until completely set and chilled.

💡 Tip: Overnight chilling produces the best flavor and texture as it allows the spices to meld.

16. To serve, remove the cheesecake cups from the muffin tin and peel away the liners if desired. Top each cup with a dollop of whipped cream and optionally garnish with a sprinkle of cinnamon, candied pecans, or a small piece of candied ginger.

💡 Tip: For cleanest presentation, gently twist and lift each cup out of the tin.

Notes

You can substitute the allspice with nutmeg.

Tips

  • Choose a small sugar pumpkin (also called pie pumpkin) rather than a large carving pumpkin for the best flavor and texture.
  • Fresh pumpkin puree has a naturally brighter, fresher flavor than canned, making these cheesecake cups extra special.
  • These cups can be made 2-3 days ahead and stored covered in the refrigerator, making them perfect for entertaining.
  • If you notice small cracks forming on the surface during cooling, don't worry—they'll be covered by the whipped cream topping.
  • For an elegant presentation, pipe the whipped cream using a star tip instead of simply dolloping it on top.
  • Let the cheesecake cups sit at room temperature for 10-15 minutes before serving for the best creamy texture and flavor.

Variations

Wanna do this up a but differently this time around? I’ve got a few variation ideas for you to try out below.

  • Gingersnap Crust: Replace graham crackers with gingersnap cookies for a spicier, more aromatic base.
  • Maple Pumpkin: Reduce sugar in the filling to 1/2 cup and add 3 tablespoons of pure maple syrup for a subtle maple flavor.
  • Chocolate Drizzle: Melt 2 ounces of dark chocolate with 1 teaspoon of coconut oil and drizzle over the cooled cheesecakes before serving.
  • Pecan Praline Topping: Top with chopped candied pecans or pecan praline pieces for added crunch and sweetness.
  • Lighter Version: Use reduced-fat cream cheese and Greek yogurt in place of sour cream for a lighter (but still delicious) option.
  • Gluten-Free: Use gluten-free graham crackers or crushed gluten-free ginger cookies for the crust.
  • Mini Cheesecakes: Use a 24-cup mini muffin tin for bite-sized portions—reduce baking time to 12-15 minutes.
no-bake pumpkin cheesecake cup

Nutrition Facts

Calories: 265 kcal

Total Fat: 18g

Saturated Fat: 10g

Cholesterol: 75mg

Sodium: 230mg

Total Carbohydrates: 22g

Dietary Fiber: 1g

Sugars: 17g

Protein: 4g

Vitamin A: 85% DV

Calcium: 6% DV

Iron: 6% DV

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